STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B30_19387COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components. (337 aa)    
Predicted Functional Partners:
B30_19377
ABC transporter permease; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 
 0.999
B30_19382
Permease; COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
 0.999
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.485
B30_04442
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
     
 0.476
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.431
Your Current Organism:
Celeribacter baekdonensis
NCBI taxonomy Id: 1208323
Other names: C. baekdonensis B30, Celeribacter baekdonensis B30, Celeribacter baekdonensis str. B30, Celeribacter baekdonensis strain B30
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.