STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF89849.1DNA-binding transcriptional regulator, MarR family. (152 aa)    
Predicted Functional Partners:
SDG27898.1
PTS system, trehalose-specific IIC component.
   
 
 0.898
SDF89870.1
ATP-binding cassette, subfamily B.
 
   
 0.879
SDF89899.1
ATP-binding cassette, subfamily B.
 
   
 0.823
SDG01466.1
PTS system, N-acetylglucosamine-specific IIC component.
     
 0.726
SDG45261.1
PTS system, maltose and glucose-specific IIC component.
     
 0.726
SDG54334.1
PTS system, glucose-specific IIC component.
     
 0.726
SDF89819.1
GntR family transcriptional regulator / MocR family aminotransferase.
     
 0.554
SDG32336.1
Histidine triad protein.
 
  
 0.502
SDF95576.1
Osmoprotectant transport system permease protein.
  
  
 0.482
pdxS
Pyridoxal 5'-phosphate synthase pdxS subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
  
    0.417
Your Current Organism:
Facklamia miroungae
NCBI taxonomy Id: 120956
Other names: CCUG 42728, CIP 106764, F. miroungae, Facklamia miroungae Hoyles et al. 2001, Facklamia sp. CCUG 42728, Facklamia sp. CCUG42728, strain A/G13/99/2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.