Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF79482.1 | SDG02254.1 | SAMN05421791_10170 | SAMN05421791_102227 | ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family. | Foldase protein PrsA. | 0.509 |
SDF79482.1 | guaB | SAMN05421791_10170 | SAMN05421791_104219 | ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.505 |
SDG02254.1 | SDF79482.1 | SAMN05421791_102227 | SAMN05421791_10170 | Foldase protein PrsA. | ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family. | 0.509 |
SDG02254.1 | SDG02286.1 | SAMN05421791_102227 | SAMN05421791_102228 | Foldase protein PrsA. | Gas vesicle protein. | 0.539 |
SDG02254.1 | SDG02311.1 | SAMN05421791_102227 | SAMN05421791_102229 | Foldase protein PrsA. | Histidine triad (HIT) family protein. | 0.606 |
SDG02254.1 | SDG10387.1 | SAMN05421791_102227 | SAMN05421791_10349 | Foldase protein PrsA. | Protein of unknown function. | 0.749 |
SDG02254.1 | SDG11239.1 | SAMN05421791_102227 | SAMN05421791_10375 | Foldase protein PrsA. | PA domain-containing protein. | 0.507 |
SDG02254.1 | SDG43121.1 | SAMN05421791_102227 | SAMN05421791_10882 | Foldase protein PrsA. | Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.594 |
SDG02254.1 | clpP | SAMN05421791_102227 | SAMN05421791_11019 | Foldase protein PrsA. | ATP-dependent Clp protease, protease subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.568 |
SDG02254.1 | ftsA | SAMN05421791_102227 | SAMN05421791_10737 | Foldase protein PrsA. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. | 0.620 |
SDG02254.1 | guaB | SAMN05421791_102227 | SAMN05421791_104219 | Foldase protein PrsA. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.576 |
SDG02254.1 | rpoB | SAMN05421791_102227 | SAMN05421791_104242 | Foldase protein PrsA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.492 |
SDG02286.1 | SDG02254.1 | SAMN05421791_102228 | SAMN05421791_102227 | Gas vesicle protein. | Foldase protein PrsA. | 0.539 |
SDG02286.1 | SDG02311.1 | SAMN05421791_102228 | SAMN05421791_102229 | Gas vesicle protein. | Histidine triad (HIT) family protein. | 0.833 |
SDG02311.1 | SDG02254.1 | SAMN05421791_102229 | SAMN05421791_102227 | Histidine triad (HIT) family protein. | Foldase protein PrsA. | 0.606 |
SDG02311.1 | SDG02286.1 | SAMN05421791_102229 | SAMN05421791_102228 | Histidine triad (HIT) family protein. | Gas vesicle protein. | 0.833 |
SDG10387.1 | SDG02254.1 | SAMN05421791_10349 | SAMN05421791_102227 | Protein of unknown function. | Foldase protein PrsA. | 0.749 |
SDG10387.1 | SDG11239.1 | SAMN05421791_10349 | SAMN05421791_10375 | Protein of unknown function. | PA domain-containing protein. | 0.427 |
SDG11239.1 | SDG02254.1 | SAMN05421791_10375 | SAMN05421791_102227 | PA domain-containing protein. | Foldase protein PrsA. | 0.507 |
SDG11239.1 | SDG10387.1 | SAMN05421791_10375 | SAMN05421791_10349 | PA domain-containing protein. | Protein of unknown function. | 0.427 |
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