STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG28296.1D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6). (471 aa)    
Predicted Functional Partners:
SDG36380.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 
0.874
SDG35317.1
D-alanyl-D-alanine carboxypeptidase.
     
 0.838
SDF86650.1
Penicillin-binding protein 1A.
  
 
 0.832
SDG02062.1
Penicillin-binding protein 2A.
  
 
 0.832
SDG03443.1
Penicillin-binding protein.
  
 
 0.832
SDG03916.1
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.800
SDF97941.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
  
  0.796
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.732
SDG56137.1
Penicillin-binding protein 2B.
 
 
 0.692
SDG38599.1
Penicillin-binding protein 2B.
  
 
 0.580
Your Current Organism:
Facklamia miroungae
NCBI taxonomy Id: 120956
Other names: CCUG 42728, CIP 106764, F. miroungae, Facklamia miroungae Hoyles et al. 2001, Facklamia sp. CCUG 42728, Facklamia sp. CCUG42728, strain A/G13/99/2
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