STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG41672.1Prepilin-type N-terminal cleavage/methylation domain-containing protein. (151 aa)    
Predicted Functional Partners:
SDG41721.1
Type II secretory pathway, component PulF.
  
  
 0.828
SDG41752.1
Competence protein ComGA.
     
 0.818
SDG41698.1
Competence protein ComGC.
       0.799
SDG41644.1
Hypothetical protein.
       0.773
SDG41620.1
Putative Competence protein ComGF.
       0.633
SDG41596.1
Hypothetical protein.
       0.586
SDG41825.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
       0.513
SDG41781.1
DNA-dependent RNA polymerase auxiliary subunit epsilon; Belongs to the UPF0356 family.
       0.490
rnj-2
Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.490
nusB
N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.476
Your Current Organism:
Facklamia miroungae
NCBI taxonomy Id: 120956
Other names: CCUG 42728, CIP 106764, F. miroungae, Facklamia miroungae Hoyles et al. 2001, Facklamia sp. CCUG 42728, Facklamia sp. CCUG42728, strain A/G13/99/2
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