STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CORC01_13705Bin/amphiphysin/Rvs domain for vesicular trafficking. (321 aa)    
Predicted Functional Partners:
CORC01_11749
Uncharacterized protein.
   
 0.814
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
 
      0.812
CORC01_13706
Uncharacterized protein.
 
  
  0.575
CORC01_13780
ANK_REP_REGION domain-containing protein.
   
  0.553
CORC01_06508
ANK_REP_REGION domain-containing protein.
   
  0.553
CORC01_00425
ANK_REP_REGION domain-containing protein.
   
  0.553
CORC01_08936
Nuclear pore glycoprotein p62.
    
  0.474
CORC01_05870
KH domain-containing protein.
  
 
   0.435
CORC01_00183
Ubiquitin family protein.
    
  0.429
CORC01_09245
Urea carboxylase.
    
  0.427
Your Current Organism:
Colletotrichum orchidophilum
NCBI taxonomy Id: 1209926
Other names: C. orchidophilum, CBS 632.80, Colletotrichum orchidophilum Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012n
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