STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CORC01_04853Uncharacterized protein. (356 aa)    
Predicted Functional Partners:
CORC01_08936
Nuclear pore glycoprotein p62.
    
 0.830
CORC01_11179
WD domain-containing protein.
    
 0.601
CORC01_09485
SPRY domain-containing protein.
    
 0.597
CORC01_00185
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.575
CORC01_09119
Uncharacterized protein.
    
 0.570
CORC01_02990
UBA/TS-N domain-containing protein.
    
  0.569
CORC01_10161
Protein transporter sec-13; Belongs to the WD repeat SEC13 family.
    
 0.561
CORC01_07850
Polyubiquitin.
    
  0.551
CORC01_07843
Non-repetitive/WGA-negative nucleoporin.
    
  0.545
CORC01_03206
WD domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.542
Your Current Organism:
Colletotrichum orchidophilum
NCBI taxonomy Id: 1209926
Other names: C. orchidophilum, CBS 632.80, Colletotrichum orchidophilum Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012n
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