STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSAL01_05895Velvet domain-containing protein. (467 aa)    
Predicted Functional Partners:
CSAL01_01135
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.676
CSAL01_06470
Methyltransferase domain-containing protein.
    
 0.559
CSAL01_04424
YTH domain-containing protein.
    
  0.555
CSAL01_00010
Developmental regulator VelB.
  
   
0.527
CSAL01_11963
Serine/threonine protein kinase.
    
  0.502
CSAL01_01497
Uncharacterized protein.
    
  0.502
RPS0
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
  0.502
CSAL01_09210
Uncharacterized protein.
    
  0.497
CSAL01_05552
RNA polymerase III transcription factor tfiiic.
    
  0.495
CSAL01_08817
Uncharacterized protein.
    
  0.488
Your Current Organism:
Colletotrichum salicis
NCBI taxonomy Id: 1209931
Other names: C. salicis, CBS 607.94, Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012s, Glomerella miyabeana, Sphaeria salicis
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.