STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSAL01_01516WD_REPEATS_REGION domain-containing protein. (639 aa)    
Predicted Functional Partners:
CSAL01_02154
AARP2CN domain-containing protein.
   
 
 0.999
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.998
CSAL01_01165
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.998
CSAL01_09768
U3 small nucleolar RNA-associated protein 22.
   
 
 0.998
CSAL01_13491
TRAUB domain-containing protein.
   
 
 0.998
CSAL01_03766
Sas10/Utp3/C1D family protein.
   
 
 0.998
CSAL01_10676
WD domain-containing protein.
   
 
 0.997
CSAL01_02919
CBF/Mak21 family protein.
   
   0.997
CSAL01_09342
WD_REPEATS_REGION domain-containing protein.
   
 
 0.997
CSAL01_05025
U3 small nucleolar RNA-associated protein 6.
   
 
 0.996
Your Current Organism:
Colletotrichum salicis
NCBI taxonomy Id: 1209931
Other names: C. salicis, CBS 607.94, Colletotrichum salicis (Fuckel) Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012s, Glomerella miyabeana, Sphaeria salicis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.