STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO24880.14-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa)    
Predicted Functional Partners:
CDO21926.1
[NADP+] succinate-semialdehyde dehydrogenase.
  
 0.943
CDO20324.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.919
mmsA_1
Methylmalonate-semialdehyde dehydrogenase.
  
 0.909
mmsA_3
Methylmalonate-semialdehyde dehydrogenase.
  
 0.909
pta_1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.893
CDO23192.1
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.892
CDO20114.1
Piperideine-6-carboxylic acid dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.890
CDO23657.1
AMP-dependent synthetase/ligase.
   
 
 0.889
CDO25169.1
propionate--CoA ligase.
   
 
 0.889
CDO21196.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.888
Your Current Organism:
Mycolicibacterium mageritense
NCBI taxonomy Id: 1209984
Other names: M. mageritense DSM 44476 = CIP 104973, Mycobacterium mageritense 938, Mycobacterium mageritense ATCC 700351, Mycobacterium mageritense CCUG 37984, Mycobacterium mageritense CIP 104973, Mycobacterium mageritense DSM 44476, Mycobacterium mageritense DSM 44476 = CIP 104973, Mycolicibacterium mageritense CIP 104973 = DSM 44476, Mycolicibacterium mageritense DSM 44476 = CIP 104973
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