STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO27227.1Integrase catalytic subunit. (497 aa)    
Predicted Functional Partners:
CDO27228.1
ATPase AAA.
    0.939
CDO21547.1
ATPase AAA.
    0.742
CDO23895.1
ATPase AAA.
    0.742
CDO25297.1
ATPase AAA.
    0.742
CDO25300.1
ATPase AAA.
    0.741
CDO26193.1
ATPase AAA.
    0.741
CDO26729.1
ATPase AAA.
    0.741
CDO26754.1
ATPase AAA.
    0.741
CDO24849.1
Type 11 methyltransferase.
  
     0.676
CDO22644.1
Multidrug ABC transporter permease.
  
     0.568
Your Current Organism:
Mycolicibacterium mageritense
NCBI taxonomy Id: 1209984
Other names: M. mageritense DSM 44476 = CIP 104973, Mycobacterium mageritense 938, Mycobacterium mageritense ATCC 700351, Mycobacterium mageritense CCUG 37984, Mycobacterium mageritense CIP 104973, Mycobacterium mageritense DSM 44476, Mycobacterium mageritense DSM 44476 = CIP 104973, Mycolicibacterium mageritense CIP 104973 = DSM 44476, Mycolicibacterium mageritense DSM 44476 = CIP 104973
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.