STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmLUnannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. (727 aa)    
Predicted Functional Partners:
ABW45_20360
Unannotated protein.
 
   0.804
ABW45_05315
Unannotated protein.
       0.722
ABW45_14465
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.701
ABW45_17425
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.699
GCA_000295735_01111
Unannotated protein.
  
 
 0.699
ABW45_07590
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.699
ABW45_07085
Unannotated protein; Belongs to the pseudouridine synthase RsuA family.
  
 
 0.699
uppS
Unannotated protein; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
   
    0.692
pnp
Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.673
ABW45_19630
Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.643
Your Current Organism:
Stenotrophomonas maltophilia S028
NCBI taxonomy Id: 1210005
Other names: S. maltophilia S028, Stenotrophomonas maltophilia str. S028, Stenotrophomonas maltophilia strain S028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.