STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN77_3481Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (283 aa)    
Predicted Functional Partners:
CCM80237.1
AMP-dependent synthetase and ligase.
  
 0.948
BN77_3480
Transcriptional regulator, AraC family.
       0.757
gltB
Glutamate synthase (NADPH) large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.710
BN77_2622
Pyridoxine 5-phosphate oxidase protein.
   
 0.635
BN77_3195
MOSC domain containing protein.
   
 0.635
paaJ
Subunit of the phenylacetly-CoA oxygenase/reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 0.635
lcdH
3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
   
 0.628
CCM79995.1
Bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase.
   
 0.628
pdhB
Pyruvate dehydrogenase E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.617
BN77_3484
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.594
Your Current Organism:
Rhizobium mesoamericanum
NCBI taxonomy Id: 1211777
Other names: R. mesoamericanum STM3625, Rhizobium mesoamericanum STM3625, Rhizobium mesoamericanum str. STM3625, Rhizobium mesoamericanum strain STM3625
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