Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APY04_0152 | APY04_0153 | APY04_0152 | APY04_0153 | Hypothetical protein; Belongs to the 'phage' integrase family. | DNA ligase, phage-associated. | 0.773 |
APY04_0153 | APY04_0152 | APY04_0153 | APY04_0152 | DNA ligase, phage-associated. | Hypothetical protein; Belongs to the 'phage' integrase family. | 0.773 |
APY04_0153 | APY04_0179 | APY04_0153 | APY04_0179 | DNA ligase, phage-associated. | Hypothetical protein. | 0.704 |
APY04_0153 | APY04_0204 | APY04_0153 | APY04_0204 | DNA ligase, phage-associated. | Exonuclease SbcC. | 0.807 |
APY04_0153 | APY04_0586 | APY04_0153 | APY04_0586 | DNA ligase, phage-associated. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.976 |
APY04_0153 | APY04_1159 | APY04_0153 | APY04_1159 | DNA ligase, phage-associated. | Hypothetical protein. | 0.664 |
APY04_0153 | APY04_1446 | APY04_0153 | APY04_1446 | DNA ligase, phage-associated. | Exodeoxyribonuclease III. | 0.832 |
APY04_0153 | APY04_2165 | APY04_0153 | APY04_2165 | DNA ligase, phage-associated. | DNA polymerase III delta prime subunit. | 0.842 |
APY04_0153 | polA | APY04_0153 | APY04_0519 | DNA ligase, phage-associated. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.944 |
APY04_0153 | rpoB | APY04_0153 | APY04_0235 | DNA ligase, phage-associated. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.731 |
APY04_0153 | sbcD | APY04_0153 | APY04_0205 | DNA ligase, phage-associated. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.664 |
APY04_0179 | APY04_0153 | APY04_0179 | APY04_0153 | Hypothetical protein. | DNA ligase, phage-associated. | 0.704 |
APY04_0179 | APY04_0204 | APY04_0179 | APY04_0204 | Hypothetical protein. | Exonuclease SbcC. | 0.491 |
APY04_0179 | APY04_0586 | APY04_0179 | APY04_0586 | Hypothetical protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.986 |
APY04_0179 | APY04_1159 | APY04_0179 | APY04_1159 | Hypothetical protein. | Hypothetical protein. | 0.403 |
APY04_0179 | polA | APY04_0179 | APY04_0519 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.992 |
APY04_0179 | rpoB | APY04_0179 | APY04_0235 | Hypothetical protein. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
APY04_0179 | sbcD | APY04_0179 | APY04_0205 | Hypothetical protein. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.403 |
APY04_0204 | APY04_0153 | APY04_0204 | APY04_0153 | Exonuclease SbcC. | DNA ligase, phage-associated. | 0.807 |
APY04_0204 | APY04_0179 | APY04_0204 | APY04_0179 | Exonuclease SbcC. | Hypothetical protein. | 0.491 |
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