STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0173Phage portal protein. (419 aa)    
Predicted Functional Partners:
APY04_0172
Prophage Clp protease-like protein; Belongs to the peptidase S14 family.
    0.973
APY04_1752
Gene Transfer Agent (GTA) ORFG06.
 
   0.968
APY04_0169
Gene Transfer Agent (GTA) ORFG06.
 
   0.957
APY04_0171
Phage major capsid protein.
 
 
 
 0.955
APY04_0174
Phage terminase, large subunit.
 
   
 0.955
APY04_2125
Phage major capsid protein.
 
 
 
 0.865
APY04_0185
Phage protein.
  
     0.772
APY04_0189
Hypothetical protein.
  
     0.772
APY04_0186
Hypothetical protein.
  
     0.764
APY04_2126
Gene Transfer Agent prohead protease, ORFG04.
 
   
 0.705
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.