STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0323Hypothetical protein. (270 aa)    
Predicted Functional Partners:
APY04_2488
Cell division protein FtsK.
    
   0.855
APY04_2550
Thymidylate kinase.
    
   0.852
APY04_2843
Hypothetical protein.
  
 0.558
APY04_0659
Cellulase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
  0.543
APY04_3319
Hypothetical protein.
   
 0.528
APY04_3481
Hypothetical protein.
  
 0.490
APY04_0322
Hypothetical protein.
      
0.423
APY04_0169
Gene Transfer Agent (GTA) ORFG06.
   
  0.408
APY04_1752
Gene Transfer Agent (GTA) ORFG06.
   
  0.408
APY04_0110
Hypothetical protein.
   
   0.403
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.