STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0346Amino acid regulated cytosolic protein. (492 aa)    
Predicted Functional Partners:
APY04_0345
Hypothetical protein.
 
  
 0.994
APY04_1136
Murein endopeptidase.
  
     0.676
APY04_2391
Hypothetical protein.
  
     0.597
APY04_1895
Protein of unknown function DUF882.
  
     0.530
APY04_3063
Hypothetical protein.
  
     0.489
APY04_3179
Hypothetical protein; Possibly including a L,D-transpeptidase domain.
  
     0.487
APY04_0530
Lysophospholipase L2.
  
     0.461
APY04_1475
ErfK/YbiS/YcfS/YnhG.
  
     0.433
APY04_2632
Hypothetical protein; Putative outer-membrane immunogenic protein precursor.
  
     0.433
APY04_0893
Hypothetical protein.
  
     0.424
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.