STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0376Putative iron-regulated membrane protein. (511 aa)    
Predicted Functional Partners:
APY04_0377
Hypothetical protein.
       0.782
APY04_3055
TonB-dependent receptor.
  
     0.763
APY04_0378
Ferrichrome-iron receptor.
 
    0.740
APY04_1278
TonB-dependent siderophore receptor.
 
    0.619
APY04_1738
Hypothetical protein.
  
    0.618
APY04_1543
Outer membrane vitamin B12 receptor BtuB.
  
    0.604
APY04_1849
Outer membrane vitamin B12 receptor BtuB.
  
     0.590
APY04_1084
Outer membrane (iron.B12.siderophore.hemin) receptor.
  
    0.552
APY04_1086
Outer membrane vitamin B12 receptor BtuB.
  
    0.544
APY04_1053
Hypothetical protein.
  
     0.536
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.