Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
APY04_0423 | APY04_0424 | Hypothetical protein. | Hypothetical protein. | 0.953 |
APY04_0423 | APY04_0651 | Hypothetical protein. | Hypothetical protein. | 0.665 |
APY04_0423 | APY04_0952 | Hypothetical protein. | Fatty acid desaturase family protein. | 0.590 |
APY04_0423 | APY04_1049 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.522 |
APY04_0423 | APY04_1050 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.613 |
APY04_0423 | APY04_1207 | Hypothetical protein. | Abortive infection protein. | 0.558 |
APY04_0423 | APY04_1311 | Hypothetical protein. | Hypothetical protein. | 0.579 |
APY04_0423 | APY04_2413 | Hypothetical protein. | Hypothetical protein. | 0.601 |
APY04_0423 | APY04_3243 | Hypothetical protein. | Paraquat-inducible protein A. | 0.537 |
APY04_0423 | APY04_3496 | Hypothetical protein. | Flp pilus assembly protein CpaD. | 0.549 |
APY04_0424 | APY04_0423 | Hypothetical protein. | Hypothetical protein. | 0.953 |
APY04_0424 | APY04_0952 | Hypothetical protein. | Fatty acid desaturase family protein. | 0.432 |
APY04_0424 | APY04_3496 | Hypothetical protein. | Flp pilus assembly protein CpaD. | 0.482 |
APY04_0651 | APY04_0423 | Hypothetical protein. | Hypothetical protein. | 0.665 |
APY04_0651 | APY04_0952 | Hypothetical protein. | Fatty acid desaturase family protein. | 0.642 |
APY04_0651 | APY04_1049 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.465 |
APY04_0651 | APY04_1050 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.612 |
APY04_0651 | APY04_1207 | Hypothetical protein. | Abortive infection protein. | 0.640 |
APY04_0651 | APY04_1311 | Hypothetical protein. | Hypothetical protein. | 0.733 |
APY04_0651 | APY04_2413 | Hypothetical protein. | Hypothetical protein. | 0.771 |
page 1 of 5