STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmoAMethylene tetrahydromethanopterin reductase; Monooxygenase that mediates oxidation of dimethyl sulfide, the first step in dimethyl sulfide degradation pathway. Has much lower activity with diethyl sulfide and other short-chain alkyl methyl sulfides. (480 aa)    
Predicted Functional Partners:
APY04_1678
Acyl-CoA dehydrogenase; Probable dibenzothiophene desulfurization enzyme.
 
    0.775
APY04_3483
Acyl-CoA dehydrogenase; Probable dibenzothiophene desulfurization enzyme.
  
    0.768
APY04_1676
FMN reductase.
  
  0.707
APY04_0476
FMN reductase.
  
  0.705
APY04_1674
ABC-type transport system periplasmic component.
  
 
  0.611
APY04_1708
Aldoxime dehydratase.
  
     0.525
APY04_1673
Alkanesulfonates transport system permease protein.
 
 
  0.464
APY04_0468
Sulfur oxidation molybdopterin C protein.
    
  0.450
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.432
APY04_0469
Hypothetical protein.
       0.430
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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