STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0676Manganese ABC transporter, inner membrane permease protein SitD. (285 aa)    
Predicted Functional Partners:
APY04_0679
Manganese ABC transporter, periplasmic-binding protein SitA; Belongs to the bacterial solute-binding protein 9 family.
 
 0.999
APY04_0678
Manganese ABC transporter, ATP-binding protein SitB.
 0.998
APY04_0677
Manganese ABC transporter, inner membrane permease protein SitC.
 
  
 
0.971
znuC
Zinc ABC transporter, ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 0.871
APY04_0894
Zinc ABC transporter, periplasmic-binding protein ZnuA.
 
 
 0.731
APY04_2635
Zinc ABC transporter, inner membrane permease protein ZnuB.
  
  
 
0.504
cysA
Sulfate and thiosulfate import ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
   
  0.456
APY04_0680
Sensory box/GGDEF family protein.
       0.404
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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