STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0944PaaD-like protein (DUF59) involved in Fe-S cluster assembly. (204 aa)    
Predicted Functional Partners:
APY04_0943
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    0.983
APY04_0941
Iron-sulfur cluster assembly ATPase protein SufC.
  
 0.977
APY04_0940
Iron-sulfur cluster assembly protein SufB.
   
 0.968
APY04_0942
Iron-sulfur cluster assembly protein SufD.
   
 0.968
APY04_3049
Sulfur acceptor protein SufE for iron-sulfur cluster assembly.
     0.787
APY04_2243
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
  
    0.712
APY04_0945
Iron binding protein SufA for iron-sulfur cluster assembly; Belongs to the HesB/IscA family.
  
    0.669
APY04_2085
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    0.631
APY04_0856
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase); Belongs to the globin family.
  
 
 0.590
APY04_0117
Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase.
  
 
 0.558
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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