STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0967Hypothetical protein. (280 aa)    
Predicted Functional Partners:
APY04_0370
Sulfur oxidation protein SoxZ.
 
 
 0.988
APY04_0371
Sulfur oxidation protein SoxY.
  
  
  0.918
APY04_0968
Zn-dependent hydrolase.
 
     0.910
APY04_1558
Rhodanese-related sulfurtransferase.
 
  
 0.841
APY04_0468
Sulfur oxidation molybdopterin C protein.
 
  
 0.810
APY04_1557
Cytochrome c553i.
 
  
  0.802
APY04_2968
MxaJ, protein involved in methanol oxidation.
 
  
  0.789
APY04_2977
MxaD protein.
  
     0.762
APY04_1562
ABC transporter substrate-binding protein.
  
    0.759
APY04_1556
Methanol dehydrogenase large subunit protein.
  
  
  0.748
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.