STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1136Murein endopeptidase. (362 aa)    
Predicted Functional Partners:
APY04_1895
Protein of unknown function DUF882.
  
     0.730
APY04_0345
Hypothetical protein.
  
     0.708
APY04_0346
Amino acid regulated cytosolic protein.
  
     0.676
APY04_0632
Membrane protein.
      0.631
APY04_3167
Ribonuclease I precursor; Belongs to the RNase T2 family.
  
     0.618
APY04_2391
Hypothetical protein.
  
     0.580
glk
Glucokinase; Belongs to the bacterial glucokinase family.
      0.579
APY04_1135
Esterase/lipase/thioesterase family active site.
       0.537
APY04_3179
Hypothetical protein; Possibly including a L,D-transpeptidase domain.
  
     0.522
APY04_1003
Hypothetical protein.
  
     0.521
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.