STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1423Glycolate dehydrogenase, subunit GlcD. (487 aa)    
Predicted Functional Partners:
APY04_1421
Glycolate dehydrogenase, iron-sulfur subunit GlcF.
 
  0.986
APY04_1422
Glycolate dehydrogenase, FAD-binding subunit GlcE.
  
  0.984
APY04_1384
Glycolate dehydrogenase, iron-sulfur subunit GlcF.
 
  0.966
APY04_1383
Glycolate dehydrogenase, FAD-binding subunit GlcE.
  
  0.933
APY04_2032
NADP-dependent malic enzyme.
  
 
 0.842
APY04_0527
Glutamate synthase [NADPH] large chain.
    
 0.773
APY04_1837
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
  0.757
APY04_2260
Catalase.
   
  0.751
APY04_1193
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.748
APY04_2080
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.748
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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