STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1425Putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE. (280 aa)    
Predicted Functional Partners:
APY04_1426
Putative L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF.
 0.998
APY04_1427
Putative L-lactate dehydrogenase, hypothetical protein subunit YkgG.
 
 
 0.979
APY04_0732
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
  0.893
APY04_0527
Glutamate synthase [NADPH] large chain.
    
  0.820
APY04_2032
NADP-dependent malic enzyme.
  
 
 0.783
APY04_2619
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.681
APY04_0492
Methylmalonyl-CoA mutase.
    
  0.645
APY04_1140
Methylmalonyl-CoA mutase.
    
  0.645
APY04_1978
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming.
    
  0.645
APY04_1397
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
   
 
  0.639
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.