STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1577Beta-ribofuranosylaminobenzene 5'-phosphate synthase. (339 aa)    
Predicted Functional Partners:
APY04_1572
Triphosphoribosyl-dephospho-CoA synthetase.
 
     0.934
mch
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.934
APY04_1575
COG1821 family protein.
 
     0.934
APY04_1576
Methylene tetrahydromethanopterin dehydrogenase.
 
     0.934
APY04_1573
Ribosomal protein S6 glutaminyl transferase; Belongs to the RimK family.
 
     0.915
APY04_1578
Pterin-4-alpha-carbinolamine dehydratase.
 
     0.888
APY04_1571
Formaldehyde activating enzyme.
 
     0.874
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.803
APY04_1554
Formylmethanofuran dehydrogenase subunit A.
 
     0.803
APY04_1568
DUF447 family protein.
 
     0.803
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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