STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1656Vitamin B12 ABC transporter, ATPase component BtuD. (253 aa)    
Predicted Functional Partners:
APY04_1657
Hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.991
APY04_2949
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.971
APY04_2383
Hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.961
APY04_1658
Vitamin B12 ABC transporter, B12-binding component BtuF.
 
 0.955
APY04_2948
Vitamin B12 ABC transporter, B12-binding component BtuF.
 
 0.843
APY04_1564
Sulfonate ABC transporter, ATP-binding subunit SsuB.
  
     0.759
APY04_1986
Hypothetical protein.
   
 0.751
APY04_2382
Periplasmic hemin-binding protein.
   
 0.751
APY04_1659
Outer membrane vitamin B12 receptor BtuB.
       0.722
APY04_1560
ABC transporter, ATP-binding protein.
 
    0.697
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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