STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1749DNA internalization-related competence protein ComEC/Rec2. (758 aa)    
Predicted Functional Partners:
APY04_2375
Competence F-like protein; Phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy.
 
  
 0.862
APY04_0984
Rossmann fold nucleotide-binding protein Smf; Possibly involved in DNA uptake.
 
  
 0.851
APY04_1489
Two-component hybrid sensor and regulator.
  
    0.760
APY04_0624
Mg(2+) chelatase family protein; ComM-related protein.
 
  
 0.758
APY04_2455
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.665
gltX
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.607
APY04_0926
Hypothetical protein.
  
     0.595
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.564
APY04_0366
Hypothetical protein.
  
  
 0.531
APY04_3011
Two-component hybrid sensor and regulator.
 
    0.529
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.