STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1800Hypothetical protein. (89 aa)    
Predicted Functional Partners:
APY04_1799
Hypothetical protein.
       0.773
APY04_3496
Flp pilus assembly protein CpaD.
  
     0.747
APY04_2310
Hypothetical protein.
  
     0.707
APY04_3495
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly.
  
     0.698
APY04_3499
Type IV prepilin peptidase TadV/CpaA.
  
     0.694
APY04_2251
Hypothetical protein.
  
     0.692
APY04_1042
Hypothetical protein.
  
     0.673
APY04_3504
Superfamily 1 helicase.
  
     0.667
APY04_1798
Hypothetical protein.
       0.664
APY04_2628
Hypothetical protein.
  
     0.655
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.