STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_1936UPF0434 protein YcaR; Belongs to the UPF0434 family. (73 aa)    
Predicted Functional Partners:
APY04_1937
Hypothetical protein.
       0.741
APY04_1935
Uncharacterized protein, similar to the N-terminal domain of Lon protease.
       0.658
APY04_1938
Hypothetical protein.
       0.575
APY04_1934
Thioredoxin domain-containing protein EC-YbbN; COG3118.
       0.503
APY04_1413
3-deoxy-D-manno-octulosonic-acid transferase.
    
  0.495
APY04_1933
Hypothetical protein.
 
     0.459
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.