Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APY04_1794 | APY04_1831 | APY04_1794 | APY04_1831 | Homoserine dehydrogenase. | Aspartate aminotransferase. | 0.558 |
APY04_1794 | APY04_2111 | APY04_1794 | APY04_2111 | Homoserine dehydrogenase. | Aspartokinase; Belongs to the aspartokinase family. | 0.969 |
APY04_1794 | APY04_2353 | APY04_1794 | APY04_2353 | Homoserine dehydrogenase. | Threonine synthase. | 0.993 |
APY04_1794 | argG | APY04_1794 | APY04_2457 | Homoserine dehydrogenase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.649 |
APY04_1794 | asd | APY04_1794 | APY04_2512 | Homoserine dehydrogenase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.987 |
APY04_1794 | dapA | APY04_1794 | APY04_0296 | Homoserine dehydrogenase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.940 |
APY04_1794 | dapB | APY04_1794 | APY04_2517 | Homoserine dehydrogenase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.664 |
APY04_1794 | lysA | APY04_1794 | APY04_1956 | Homoserine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.712 |
APY04_1794 | metXA | APY04_1794 | APY04_3368 | Homoserine dehydrogenase. | Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. | 0.982 |
APY04_1794 | purA | APY04_1794 | APY04_3421 | Homoserine dehydrogenase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.601 |
APY04_1831 | APY04_1794 | APY04_1831 | APY04_1794 | Aspartate aminotransferase. | Homoserine dehydrogenase. | 0.558 |
APY04_1831 | APY04_2111 | APY04_1831 | APY04_2111 | Aspartate aminotransferase. | Aspartokinase; Belongs to the aspartokinase family. | 0.898 |
APY04_1831 | argG | APY04_1831 | APY04_2457 | Aspartate aminotransferase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.919 |
APY04_1831 | lysA | APY04_1831 | APY04_1956 | Aspartate aminotransferase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.444 |
APY04_1831 | purA | APY04_1831 | APY04_3421 | Aspartate aminotransferase. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.905 |
APY04_2111 | APY04_1794 | APY04_2111 | APY04_1794 | Aspartokinase; Belongs to the aspartokinase family. | Homoserine dehydrogenase. | 0.969 |
APY04_2111 | APY04_1831 | APY04_2111 | APY04_1831 | Aspartokinase; Belongs to the aspartokinase family. | Aspartate aminotransferase. | 0.898 |
APY04_2111 | APY04_2353 | APY04_2111 | APY04_2353 | Aspartokinase; Belongs to the aspartokinase family. | Threonine synthase. | 0.908 |
APY04_2111 | argG | APY04_2111 | APY04_2457 | Aspartokinase; Belongs to the aspartokinase family. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.854 |
APY04_2111 | asd | APY04_2111 | APY04_2512 | Aspartokinase; Belongs to the aspartokinase family. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.994 |
page 1 of 4