STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_2203Branched-chain amino acid transport ATP-binding protein LivF; TCDB 3.A.1.4.1. (261 aa)    
Predicted Functional Partners:
APY04_2201
Branched-chain amino acid transport system permease protein LivM; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
APY04_2200
High-affinity branched-chain amino acid transport system permease protein LivH; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 0.993
APY04_1684
Branched-chain amino acid transport system permease protein LivM; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
APY04_2205
High-affinity leucine-specific transport system, periplasmic binding protein LivK; TCDB 3.A.1.4.1.
 
 
  0.969
APY04_2202
Branched-chain amino acid transport ATP-binding protein LivG; TCDB 3.A.1.4.1.
 
 
0.939
APY04_1685
High-affinity branched-chain amino acid transport system permease protein LivH; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
 
 0.895
APY04_2736
Urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.
 
 0.863
APY04_2204
Hypothetical protein.
 
     0.830
APY04_2737
Urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.819
APY04_1686
Branched-chain amino acid transport ATP-binding protein LivG; TCDB 3.A.1.4.1.
 
 
0.736
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.