STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_2356Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (1383 aa)    
Predicted Functional Partners:
APY04_0114
Hypothetical protein.
 
0.805
APY04_1938
Hypothetical protein.
 0.797
APY04_2355
Ribosomal-protein-S5p-alanine acetyltransferase.
       0.773
APY04_3011
Two-component hybrid sensor and regulator.
  
 0.770
APY04_2353
Threonine synthase.
       0.693
APY04_2354
Mitochondrial processing peptidase-like protein; Belongs to the peptidase M16 family.
       0.693
APY04_2694
Methyl-accepting chemotaxis protein.
    
  0.653
APY04_1489
Two-component hybrid sensor and regulator.
 
 0.637
APY04_3063
Hypothetical protein.
  
     0.598
APY04_1256
Hypothetical protein.
  
     0.552
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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