STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_2432Extracellular ligand-binding receptor. (404 aa)    
Predicted Functional Partners:
APY04_1684
Branched-chain amino acid transport system permease protein LivM; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
   
 
 0.719
APY04_2201
Branched-chain amino acid transport system permease protein LivM; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
   
 
 0.719
APY04_1685
High-affinity branched-chain amino acid transport system permease protein LivH; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
   
 
 0.634
APY04_2200
High-affinity branched-chain amino acid transport system permease protein LivH; TCDB 3.A.1.4.1; Belongs to the binding-protein-dependent transport system permease family.
   
 
 0.634
APY04_1686
Branched-chain amino acid transport ATP-binding protein LivG; TCDB 3.A.1.4.1.
   
 
 0.616
APY04_2202
Branched-chain amino acid transport ATP-binding protein LivG; TCDB 3.A.1.4.1.
   
 
 0.616
rsmI
rRNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
   0.616
cpoB
TPR repeat containing exported protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
  0.607
APY04_2737
Urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.591
APY04_0650
Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.580
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.