Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APY04_0993 | APY04_1128 | APY04_0993 | APY04_1128 | Dihydroorotase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.993 |
APY04_0993 | APY04_3178 | APY04_0993 | APY04_3178 | Dihydroorotase. | Dihydroorotase. | 0.830 |
APY04_0993 | carA | APY04_0993 | APY04_3228 | Dihydroorotase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.989 |
APY04_0993 | carB | APY04_0993 | APY04_3226 | Dihydroorotase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.991 |
APY04_0993 | pyrB | APY04_0993 | APY04_0994 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
APY04_0993 | pyrE | APY04_0993 | APY04_0914 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.895 |
APY04_0993 | pyrF | APY04_0993 | APY04_2450 | Dihydroorotase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.869 |
APY04_1128 | APY04_0993 | APY04_1128 | APY04_0993 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Dihydroorotase. | 0.993 |
APY04_1128 | APY04_3178 | APY04_1128 | APY04_3178 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Dihydroorotase. | 0.983 |
APY04_1128 | carA | APY04_1128 | APY04_3228 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.978 |
APY04_1128 | carB | APY04_1128 | APY04_3226 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.994 |
APY04_1128 | pyrB | APY04_1128 | APY04_0994 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.990 |
APY04_1128 | pyrE | APY04_1128 | APY04_0914 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.998 |
APY04_1128 | pyrF | APY04_1128 | APY04_2450 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.991 |
APY04_1128 | pyrH | APY04_1128 | APY04_1117 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.437 |
APY04_3178 | APY04_0993 | APY04_3178 | APY04_0993 | Dihydroorotase. | Dihydroorotase. | 0.830 |
APY04_3178 | APY04_1128 | APY04_3178 | APY04_1128 | Dihydroorotase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.983 |
APY04_3178 | carA | APY04_3178 | APY04_3228 | Dihydroorotase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.988 |
APY04_3178 | carB | APY04_3178 | APY04_3226 | Dihydroorotase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.989 |
APY04_3178 | pyrB | APY04_3178 | APY04_0994 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
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