Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
APY04_0004 | APY04_0652 | Transcriptional regulator, MarR family. | HemY-like protein. | 0.610 |
APY04_0004 | APY04_2555 | Transcriptional regulator, MarR family. | Hypothetical protein. | 0.577 |
APY04_0650 | APY04_0652 | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | HemY-like protein. | 0.837 |
APY04_0650 | APY04_1301 | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Hypothetical protein. | 0.569 |
APY04_0650 | APY04_2432 | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Extracellular ligand-binding receptor. | 0.580 |
APY04_0650 | APY04_2555 | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | Hypothetical protein. | 0.525 |
APY04_0652 | APY04_0004 | HemY-like protein. | Transcriptional regulator, MarR family. | 0.610 |
APY04_0652 | APY04_0650 | HemY-like protein. | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.837 |
APY04_0652 | APY04_0923 | HemY-like protein. | Hypothetical protein. | 0.610 |
APY04_0652 | APY04_2406 | HemY-like protein. | Hypothetical protein. | 0.417 |
APY04_0652 | APY04_2432 | HemY-like protein. | Extracellular ligand-binding receptor. | 0.414 |
APY04_0652 | APY04_2555 | HemY-like protein. | Hypothetical protein. | 0.719 |
APY04_0652 | APY04_2558 | HemY-like protein. | Transporter. | 0.600 |
APY04_0923 | APY04_0652 | Hypothetical protein. | HemY-like protein. | 0.610 |
APY04_0923 | APY04_2555 | Hypothetical protein. | Hypothetical protein. | 0.572 |
APY04_1301 | APY04_0650 | Hypothetical protein. | Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.569 |
APY04_1301 | APY04_2432 | Hypothetical protein. | Extracellular ligand-binding receptor. | 0.411 |
APY04_1301 | APY04_2554 | Hypothetical protein. | Putative RNA methyltransferase, TrmH family. | 0.632 |
APY04_1301 | APY04_2555 | Hypothetical protein. | Hypothetical protein. | 0.495 |
APY04_2406 | APY04_0652 | Hypothetical protein. | HemY-like protein. | 0.417 |
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