STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_2886Nucleoside-diphosphate sugar epimerase/dehydratase. (634 aa)    
Predicted Functional Partners:
APY04_0684
Lipid carrier : UDP-N-acetylgalactosaminyltransferase.
 
 0.977
APY04_0682
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.922
APY04_3107
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.906
APY04_1523
Hypothetical protein.
  
 
 0.880
APY04_2785
Hypothetical protein.
  
 
 0.880
APY04_0664
4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.836
APY04_2887
Hypothetical protein.
 
  
 0.821
APY04_0988
Glutamate--UDP-2-acetamido-2-deoxy-D-ribohex-3- uluronic acid aminotransferase (PLP cofactor); Belongs to the DegT/DnrJ/EryC1 family.
 
 0.782
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
  
 0.746
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.696
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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