STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_2960Hypothetical protein. (290 aa)    
Predicted Functional Partners:
APY04_2959
Hypothetical protein.
   
 0.981
APY04_2958
3-dehydroquinate synthase.
 
   
 0.950
APY04_2961
Hypothetical protein.
 
     0.896
APY04_2962
Hypothetical protein.
 
   
 0.871
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
  0.844
APY04_2955
Hypothetical protein.
 
   
 0.804
APY04_3476
Signal transduction protein; Containing GAF and PtsI domain.
  
     0.725
APY04_1333
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.703
APY04_1382
Glycolate dehydrogenase, subunit GlcD.
     
 0.607
APY04_1383
Glycolate dehydrogenase, FAD-binding subunit GlcE.
     
 0.607
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.