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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_3205Isocitrate lyase. (357 aa)    
Predicted Functional Partners:
APY04_2032
NADP-dependent malic enzyme.
   
 
 0.968
APY04_0756
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.902
APY04_0608
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
 0.846
APY04_1193
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.845
APY04_0898
Serine--glyoxylate aminotransferase.
     
 0.844
APY04_1386
Serine--glyoxylate aminotransferase.
     
 0.844
APY04_3204
Transcriptional regulator, XRE family.
 
   
 0.785
APY04_2080
Hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.765
APY04_2183
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
 0.760
APY04_1384
Glycolate dehydrogenase, iron-sulfur subunit GlcF.
     
 0.736
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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