STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_3238UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid transferase. (357 aa)    
Predicted Functional Partners:
APY04_3236
Glycosyltransferase.
     0.962
APY04_3237
O-antigen flippase Wzx.
 
    0.847
APY04_3107
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.837
APY04_0989
Oxidoreductase.
  
    0.752
APY04_0991
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
 
  
 0.660
APY04_2793
Hypothetical protein.
 
     0.600
APY04_1270
Oxalate decarboxylase.
  
  
 0.464
APY04_0988
Glutamate--UDP-2-acetamido-2-deoxy-D-ribohex-3- uluronic acid aminotransferase (PLP cofactor); Belongs to the DegT/DnrJ/EryC1 family.
  
    0.454
APY04_3239
Hypothetical protein.
       0.427
APY04_0667
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.426
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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