STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_3498Flp pilus assembly protein RcpC/CpaB. (246 aa)    
Predicted Functional Partners:
APY04_3495
Type II/IV secretion system ATPase TadZ/CpaE, associated with Flp pilus assembly.
 
  
 0.986
APY04_3493
Flp pilus assembly protein TadB.
 
  
 0.985
APY04_3497
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.
 
  
 0.985
APY04_3492
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
  
 0.979
APY04_3499
Type IV prepilin peptidase TadV/CpaA.
 
  
 0.968
APY04_3494
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
 
  
 0.946
APY04_3500
Flp pilus assembly protein, pilin Flp.
 
  
 0.937
APY04_3502
Hypothetical protein; Similar to secretin RcpA/CpaC, associated with Flp pilus assembly.
 
  
 0.913
APY04_3503
Hypothetical protein; Similar to TadZ/CpaE, associated with Flp pilus assembly.
 
    0.893
APY04_0921
Hypothetical protein.
 
    0.892
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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