STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cob_v004674Protein YIP. (299 aa)    
Predicted Functional Partners:
yip5
Protein YIP.
   
 
 0.957
TVP23
Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.
   
 
 0.866
yip1
Protein transport protein yip1.
   
 
 0.656
vps5
Vacuolar protein sorting-associated protein vps5.
    
  0.510
ARF
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
    
  0.482
apm1
Ap-1 adaptor complex subunit; Belongs to the adaptor complexes medium subunit family.
     
 0.471
hrf1
ER to Golgi transport protein yif1-like protein.
   
 
 0.421
Your Current Organism:
Colletotrichum orbiculare
NCBI taxonomy Id: 1213857
Other names: C. orbiculare MAFF 240422, Colletotrichum orbiculare 104-T, Colletotrichum orbiculare MAFF 240422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.