STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lepB-1Zn2cys6 transcription factor. (868 aa)    
Predicted Functional Partners:
GDE1
Glycerophosphocholine phosphodiesterase GDE1.
    
 0.753
Cob_v010553
Nitrate reductase.
    
  0.722
apf12
Cytochrome b5-like reductase apf12.
    
  0.722
utp20
U3 small nucleolar RNA-associated protein 20.
   
  0.600
utp5
U3 small Nucleolar RNA-associated protein 5.
    
  0.558
rps602
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.557
utp4
U3 small nucleolar RNA-associated protein 4.
    
  0.556
nop-58
Nucleolar protein nop5.
    
  0.556
utp17
U3 small nucleolar RNA-associated protein 17.
   
  0.554
utp15
Small nucleolar ribonucleoprotein complex subunit.
   
  0.553
Your Current Organism:
Colletotrichum orbiculare
NCBI taxonomy Id: 1213857
Other names: C. orbiculare MAFF 240422, Colletotrichum orbiculare 104-T, Colletotrichum orbiculare MAFF 240422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.