STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plyC-0Putative pectate lyase C. (439 aa)    
Predicted Functional Partners:
MYO2
Myosin-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  0.581
ucp7
UBA domain-containing protein 7.
    
  0.581
tnr3
Thiamine pyrophosphokinase.
    
  0.555
sge1
Global transcription regulator sge1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.547
Cob_13472
Putative CDP-alcohol phosphatidyltransferase class-I family protein.
    
  0.547
rga4
Putative Rho-type GTPase-activating protein 4.
    
  0.542
GDE1
Glycerophosphocholine phosphodiesterase GDE1.
    
  0.524
csh3
Sh3 domain containing protein.
    
  0.512
nuc-2
Ankyrin repeat protein nuc-2.
    
  0.503
pme1-2
Pectinesterase.
 
  
   0.477
Your Current Organism:
Colletotrichum orbiculare
NCBI taxonomy Id: 1213857
Other names: C. orbiculare MAFF 240422, Colletotrichum orbiculare 104-T, Colletotrichum orbiculare MAFF 240422
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.