STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsiVAnti-sigma factor. (286 aa)    
Predicted Functional Partners:
EMG28866.1
Putative endo-1,4-beta-xylanase; COG0726 Predicted xylanase/chitin deacetylase.
  
    0.742
EMG26893.1
Helix-turn-helix domain of resolvase; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.593
rpoE_2
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.428
Your Current Organism:
Listeria fleischmannii
NCBI taxonomy Id: 1214117
Other names: L. fleischmannii subsp. fleischmannii LU2006-1, Listeria fleischmannii LU2006-1, Listeria fleischmannii subsp. fleischmannii DSM 24998, Listeria fleischmannii subsp. fleischmannii LU2006-1, Listeria sp. LU2006-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.