STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2F7B1Putative 3-dehydroshikimate dehydratase. (455 aa)    
Predicted Functional Partners:
A0A0G2HPF8
Uncharacterized protein.
 
      0.842
A0A0G2FZI5
Putative gyf domain-containing protein.
    
 
 0.757
A0A0G2FI46
RBR-type E3 ubiquitin transferase.
    
 0.676
A0A0G2H4V6
Putative eukaryotic translation initiation factor 4e; Belongs to the eukaryotic initiation factor 4E family.
     
 0.596
A0A0G2F9J7
Putative potassium ion channel yvc1.
    
 
 0.549
A0A0G2HMT5
AB hydrolase-1 domain-containing protein.
    
 
 0.549
A0A0G2FNL8
Putative glycosyltransferase family 69 protein.
    
 0.503
A0A0G2H8S0
Putative polysaccharide export protein.
    
 0.503
A0A0G2IFI3
Putative eukaryotic translation initiation factor subunit.
    
 0.503
A0A0G2FFJ5
RBR-type E3 ubiquitin transferase.
    
  0.474
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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