STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2F877LsmAD domain-containing protein. (667 aa)    
Predicted Functional Partners:
A0A0G2FYV1
Putative polyadenylate-binding protein.
   
 
 0.951
A0A0G2FF26
Putative atp-dependent rna helicase dhh1; Belongs to the DEAD box helicase family.
    
 
 0.944
A0A0G2HG00
Putative lsm domain-containing protein.
    
   0.937
A0A0G2FPE2
Putative lsm domain-containing protein.
    
   0.829
A0A0G2H1T5
Uncharacterized protein.
    
   0.829
A0A0G2FG14
Putative mrna binding post-transcriptional regulator.
    
 
 0.783
A0A0G2HJU0
Putative mrna-binding post-transcriptional regulator.
    
 
 0.783
A0A0G2HS23
Putative trna selenocysteine-associated protein 1.
    
 
 0.783
A0A0G2FZH9
Putative xpg domain-containing protein.
    
 
 0.730
A0A0G2FYX4
Putative ntf2 and rrm domain-containing protein.
   
 
 0.699
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.