STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2F8R0Putative mrna cleavage factor complex component pcf11. (146 aa)    
Predicted Functional Partners:
A0A0G2FS53
Putative yt521-b-like splicing protein.
   
 0.997
CLP1
mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.
    
 0.996
A0A0G2HYE7
Putative cleavage stimulation factor 64-kDa subunit.
    
 0.986
A0A0G2F885
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.985
A0A0G2H720
Putative mrna 3end-processing protein rna-14.
    
 0.985
A0A0G2IEM5
Putative endoribonuclease ysh1.
    
 0.985
A0A0G2IBS2
Putative mrna cleavage and polyadenylation specificity factor complex subunit.
    
 0.982
A0A0G2FA80
Uncharacterized protein.
   
 
 0.965
A0A0G2FDG8
Putative cleavage factor two protein 1.
    
 0.961
A0A0G2HAE7
Putative cleavage factor two protein 1.
    
 0.961
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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