STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0G2FNB3Putative pectate lyase b. (332 aa)    
Predicted Functional Partners:
A0A0G2FP00
Uncharacterized protein.
   
 0.713
A0A0G2I9H3
Putative e3 ubiquitin ligase complex scf subunit scon-3; Belongs to the SKP1 family.
   
 0.713
A0A0G2IF79
Putative ring-box protein 1.
    
 0.698
A0A0G2FHY7
Putative cullulin 3; Belongs to the cullin family.
    
 0.654
A0A0G2IB04
Putative cullin family protein; Belongs to the cullin family.
    
 0.654
A0A0G2FEF6
Putative nedd8-like protein.
    
 0.612
A0A0G2H3Y4
Putative transcriptional elongation regulator (Elongin c); Belongs to the SKP1 family.
    
 0.558
A0A0G2HDA9
Putative endopolygalacturonase 3.
     
 0.554
A0A0G2FNA6
Putative pectate lyase.
     
 0.545
A0A0G2HKQ8
Pectinesterase; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.543
Your Current Organism:
Diaporthe ampelina
NCBI taxonomy Id: 1214573
Other names: CBS 114016, D. ampelina, Diaporthe ampelina (Berk. & M.A. Curtis) R.R. Gomes, C. Glienke & Crous, Diaporthe neoviticola, Diaporthe sp. DU-2012e, Fusicoccum viticolum, Phoma ampelina, Phoma viticola, Phomopsis ampelina, Phomopsis sp. Pho06, Phomopsis sp. Pho07, Phomopsis sp. Pho10, Phomopsis sp. Pho16, Phomopsis sp. Pho18, Phomopsis sp. Pho24, Phomopsis sp. Pho25, Phomopsis sp. Pho26, Phomopsis sp. Pho28, Phomopsis sp. Pho32, Phomopsis sp. PhoCT1L, Phomopsis sp. taxon 2, Phomopsis viticola, STEU 2660
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